Information on the Australian Aboriginal Metapopulation

The Australian Aboriginal Metapopulation (Australian Aboriginal) consists of 785 haplotypes (at least minimal) which were published in 1 population study.

Most common haplotypes

Count	DYS19	DYS389I	DYS389II	DYS390	DYS391	DYS392	DYS393	DYS385
36	14	13	29	24	11	13	13	11,14
18	14	13	29	24	11	13	13	11,15
17	14	13	29	23	11	13	13	11,14
16	17	12	29	24	10	11	13	12,12
14	14	13	30	24	11	13	13	11,14
14	15	12	27	23	8	12	13	9,18
11	15	13	30	25	10	13	13	9,16
11	15	13	31	24	10	13	13	9,16
10	14	13	29	23	10	13	13	11,14
10	14	13	29	24	10	13	13	11,14

Count	DYS391	DYS389I	DYS439	DYS389II	DYS438	DYS437	DYS19	DYS392	DYS393	DYS390	DYS385
20	11	13	12	29	12	15	14	13	13	24	11,14
13	8	12	12	27	11	14	15	12	13	23	9,18
12	11	13	12	29	12	15	14	13	13	23	11,14
11	10	13	12	30	10	16	15	13	13	25	9,16
10	11	13	13	29	12	15	14	13	12	25	11,14
9	10	13	12	29	8	15	16	14	13	24	12,14
9	10	13	12	31	10	16	15	13	13	24	9,16
8	10	12	11	29	12	15	17	11	13	24	12,12
8	11	13	12	30	12	15	14	13	13	24	11,14
7	10	12	12	28	11	14	15	11	13	24	10,17

Count	DYS456	DYS389I	DYS390	DYS389II	DYS458	DYS19	DYS385	DYS393	DYS391	DYS439	DYS635	DYS392	YGATAH4	DYS437	DYS438	DYS448
10	16	13	25	29	16	14	11,14	12	11	13	23	13	12	15	12	19
8	14	13	24	29	18	16	12,14	13	10	12	21	14	12	15	8	20
7	15	12	23	27	17	15	9,18	13	8	12	23	12	10	14	11	20
7	15	13	21	31	17	16	16,17	13	10	11	21	11	12	14	11	20
7	16	12	24	29	16	17	12,12	13	10	11	22	11	13	15	12	22
6	11	13	25	30	18	15	9,16	13	10	12	26	13	11	16	10	20
6	14	12	22	29	15	14	13,15	13	10	11	24	11	11	16	10	20
6	14	13	24	29	19	15	11,14	13	10	11	21	14	12	15	8	20
6	16	13	24	30	17	14	11,14	13	11	13	23	13	12	15	12	19
6	16	13	24	30	18	14	11,14	13	11	12	23	13	12	15	12	19

There are no Y23 haplotypes or all haplotypes are singletons.

Count	DYS576	DYS389I	DYS635	DYS389II	DYS627	DYS460	DYS458	DYS19	YGATAH4	DYS448	DYS391	DYS456	DYS390	DYS438	DYS392	DYS518	DYS570	DYS437	DYS385	DYS449	DYS393	DYS439	DYS481	DYF387S1	DYS533
10	18	13	23	29	22	11	16	14	12	19	11	16	25	12	13	38	18	15	11,14	30	12	13	22	35,36	13
8	18	13	21	29	22	11	18	16	12	20	10	14	24	8	14	37	18	15	12,14	28	13	12	24	38,39	12
6	18	13	21	29	22	10	19	15	12	20	10	14	24	8	14	37	18	15	11,14	29	13	11	24	38,39	11
5	17	12	24	29	19	10	15	14	11	20	10	14	22	10	11	41	20	16	13,15	28	13	11	24	37,37	11
5	17	13	21	31	22	10	17	16	12	20	10	15	21	11	11	40	17	14	16,17	28	13	11	27	38,38	11
5	19	13	26	30	22	11	18	15	11	20	10	10	25	10	13	34	19	16	9,16	27	13	12	24	36,36	12
5	20	13	23	30	24	11	17	14	12	19	11	16	24	12	13	38	16	15	11,14	29	13	13	22	35,37	14
4	17	12	21	29	19	11	18	15	12	21	10	16	22	10	11	37	18	16	13,16	32	14	12	23	38,39	9
4	17	12	22	29	22	11	16	17	13	22	10	16	24	12	11	35	20	16	12,12	29	13	11	22	36,38	9
4	17	13	23	29	24	11	17	14	11	19	11	17	23	12	13	37	17	15	11,14	28	13	12	21	35,39	12

There are no Ymax haplotypes or all haplotypes are singletons.

Discrete-Laplace frequency estimation (Minimal)

Release: R69
Loci included: DYS19, DYS389I, DYS389II^*, DYS390, DYS391, DYS392, DYS393
Central haplotypes: 14
EM converged: true
EM iterations: 44
GLM method: internal_coef
Init method: pam
Threshold frequency: 1 in 53,695
Per locus details: DL centers distribution (download PDF)

Table of haplotype centers (click to show/hide)

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	15	14	18	25	10	13	12
2	14	13	17	24	11	13	13
3	15	12	17	22	10	11	13
4	14	13	16	24	11	13	13
5	14	13	16	23	11	13	13
6	14	12	16	23	10	11	13
7	15	14	17	19	10	11	13
8	15	13	16	24	10	12	15
9	15	12	15	23	8	12	13
10	15	13	16	24	10	14	13
11	17	12	17	24	10	11	13
12	16	13	18	21	10	11	14
13	15	13	17	25	10	13	13
14	15	13	17	24	10	11	13

Discrete-Laplace frequency estimation (Y17)

Release: R69
Loci included: DYS19, DYS389I, DYS389II^*, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATAH4
Central haplotypes: 17
EM converged: true
EM iterations: 143
GLM method: internal_coef
Init method: pam
Threshold frequency: 1 in 120,743,388
Per locus details: DL centers distribution (download PDF)

Table of haplotype centers (click to show/hide)

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	17	24	11	13	12	16	10	11	21	14	19	28	11
2	14	13	16	24	11	13	13	15	12	12	19	16	17	23	12
3	15	13	17	23	10	11	13	14	10	12	20	15	17	22	11
4	14	13	16	24	11	13	13	15	12	12	19	15	17	23	12
5	16	14	18	25	10	13	12	16	10	12	22	13	18	27	11
6	15	14	17	19	10	11	13	14	11	11	23	14	17	24	12
7	15	12	16	24	10	11	13	14	11	12	21	16	17	20	11
8	15	13	16	24	10	12	15	15	10	11	20	14	16	19	11
9	15	12	15	23	8	12	13	14	11	12	20	15	17	23	10
10	14	12	16	22	10	11	13	16	10	11	20	14	15	22	11
11	14	13	16	25	11	14	13	15	12	12	18	17	17	23	12
12	17	12	17	24	10	11	13	15	12	11	22	16	16	22	13
13	15	13	16	24	10	14	13	15	8	12	20	14	19	21	12
14	16	13	18	21	10	11	13	14	11	12	21	15	17	21	12
15	15	13	17	25	11	11	13	14	11	10	20	16	15	23	12
16	15	13	17	25	10	13	13	16	10	12	20	11	18	26	11
17	15	12	17	22	10	11	14	16	10	12	21	15	18	20	12

^* Please note that DYS389I was substracted from DYS389II

Population study

Henry J., Dao H., Scandrett L. and Taylor D. (2019), 'Population genetic analysis of Yfiler® Plus haplotype data for three South Australian populations', For Sci Int Genet 41:e23-e25 [DOI]

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	15	14	18	25	10	13	12
2	14	13	17	24	11	13	13
3	15	12	17	22	10	11	13
4	14	13	16	24	11	13	13
5	14	13	16	23	11	13	13
6	14	12	16	23	10	11	13
7	15	14	17	19	10	11	13
8	15	13	16	24	10	12	15
9	15	12	15	23	8	12	13
10	15	13	16	24	10	14	13
11	17	12	17	24	10	11	13
12	16	13	18	21	10	11	14
13	15	13	17	25	10	13	13
14	15	13	17	24	10	11	13

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	17	24	11	13	12	16	10	11	21	14	19	28	11
2	14	13	16	24	11	13	13	15	12	12	19	16	17	23	12
3	15	13	17	23	10	11	13	14	10	12	20	15	17	22	11
4	14	13	16	24	11	13	13	15	12	12	19	15	17	23	12
5	16	14	18	25	10	13	12	16	10	12	22	13	18	27	11
6	15	14	17	19	10	11	13	14	11	11	23	14	17	24	12
7	15	12	16	24	10	11	13	14	11	12	21	16	17	20	11
8	15	13	16	24	10	12	15	15	10	11	20	14	16	19	11
9	15	12	15	23	8	12	13	14	11	12	20	15	17	23	10
10	14	12	16	22	10	11	13	16	10	11	20	14	15	22	11
11	14	13	16	25	11	14	13	15	12	12	18	17	17	23	12
12	17	12	17	24	10	11	13	15	12	11	22	16	16	22	13
13	15	13	16	24	10	14	13	15	8	12	20	14	19	21	12
14	16	13	18	21	10	11	13	14	11	12	21	15	17	21	12
15	15	13	17	25	11	11	13	14	11	10	20	16	15	23	12
16	15	13	17	25	10	13	13	16	10	12	20	11	18	26	11
17	15	12	17	22	10	11	14	16	10	12	21	15	18	20	12

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	15	14	18	25	10	13	12
2	14	13	17	24	11	13	13
3	15	12	17	22	10	11	13
4	14	13	16	24	11	13	13
5	14	13	16	23	11	13	13
6	14	12	16	23	10	11	13
7	15	14	17	19	10	11	13
8	15	13	16	24	10	12	15
9	15	12	15	23	8	12	13
10	15	13	16	24	10	14	13
11	17	12	17	24	10	11	13
12	16	13	18	21	10	11	14
13	15	13	17	25	10	13	13
14	15	13	17	24	10	11	13

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	17	24	11	13	12	16	10	11	21	14	19	28	11
2	14	13	16	24	11	13	13	15	12	12	19	16	17	23	12
3	15	13	17	23	10	11	13	14	10	12	20	15	17	22	11
4	14	13	16	24	11	13	13	15	12	12	19	15	17	23	12
5	16	14	18	25	10	13	12	16	10	12	22	13	18	27	11
6	15	14	17	19	10	11	13	14	11	11	23	14	17	24	12
7	15	12	16	24	10	11	13	14	11	12	21	16	17	20	11
8	15	13	16	24	10	12	15	15	10	11	20	14	16	19	11
9	15	12	15	23	8	12	13	14	11	12	20	15	17	23	10
10	14	12	16	22	10	11	13	16	10	11	20	14	15	22	11
11	14	13	16	25	11	14	13	15	12	12	18	17	17	23	12
12	17	12	17	24	10	11	13	15	12	11	22	16	16	22	13
13	15	13	16	24	10	14	13	15	8	12	20	14	19	21	12
14	16	13	18	21	10	11	13	14	11	12	21	15	17	21	12
15	15	13	17	25	11	11	13	14	11	10	20	16	15	23	12
16	15	13	17	25	10	13	13	16	10	12	20	11	18	26	11
17	15	12	17	22	10	11	14	16	10	12	21	15	18	20	12

Information on the Australian Aboriginal Metapopulation

Metapopulation substrcuture

Most common haplotypes

Discrete-Laplace frequency estimation (Minimal)

Discrete-Laplace frequency estimation (Y17)

Population study

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	15	14	18	25	10	13	12
2	14	13	17	24	11	13	13
3	15	12	17	22	10	11	13
4	14	13	16	24	11	13	13
5	14	13	16	23	11	13	13
6	14	12	16	23	10	11	13
7	15	14	17	19	10	11	13
8	15	13	16	24	10	12	15
9	15	12	15	23	8	12	13
10	15	13	16	24	10	14	13
11	17	12	17	24	10	11	13
12	16	13	18	21	10	11	14
13	15	13	17	25	10	13	13
14	15	13	17	24	10	11	13

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	17	24	11	13	12	16	10	11	21	14	19	28	11
2	14	13	16	24	11	13	13	15	12	12	19	16	17	23	12
3	15	13	17	23	10	11	13	14	10	12	20	15	17	22	11
4	14	13	16	24	11	13	13	15	12	12	19	15	17	23	12
5	16	14	18	25	10	13	12	16	10	12	22	13	18	27	11
6	15	14	17	19	10	11	13	14	11	11	23	14	17	24	12
7	15	12	16	24	10	11	13	14	11	12	21	16	17	20	11
8	15	13	16	24	10	12	15	15	10	11	20	14	16	19	11
9	15	12	15	23	8	12	13	14	11	12	20	15	17	23	10
10	14	12	16	22	10	11	13	16	10	11	20	14	15	22	11
11	14	13	16	25	11	14	13	15	12	12	18	17	17	23	12
12	17	12	17	24	10	11	13	15	12	11	22	16	16	22	13
13	15	13	16	24	10	14	13	15	8	12	20	14	19	21	12
14	16	13	18	21	10	11	13	14	11	12	21	15	17	21	12
15	15	13	17	25	11	11	13	14	11	10	20	16	15	23	12
16	15	13	17	25	10	13	13	16	10	12	20	11	18	26	11
17	15	12	17	22	10	11	14	16	10	12	21	15	18	20	12