Information on the Admixed - U.S. Native American Metapopulation

The U.S. Native American Metapopulation (Admixed - U.S. Native American) consists of 4,556 haplotypes (at least minimal) which were published in 4 population studies and were additionally submitted via personal communication (7 submissions) .

Most common haplotypes

Count DYS19 DYS389I DYS389II DYS390 DYS391 DYS392 DYS393 DYS385
126 14 13 29 24 11 13 13 11,14
86 14 12 28 25 10 14 14 16,17
82 13 12 29 23 10 15 13 15,17
80 15 13 29 23 9 11 12 15,15
52 14 13 29 24 10 13 13 11,14
51 13 13 31 23 10 14 13 14,17
51 14 13 29 23 11 13 13 11,14
50 13 14 32 23 10 15 13 15,18
42 13 12 29 24 11 16 13 14,14
42 14 12 28 22 10 11 13 13,14
Count DYS391 DYS389I DYS439 DYS389II DYS438 DYS437 DYS19 DYS392 DYS393 DYS390 DYS385
71 9 13 11 29 10 14 15 11 12 23 15,15
63 10 12 12 28 11 14 14 14 14 25 16,17
51 10 12 13 29 11 14 13 15 13 23 15,17
50 10 14 10 32 12 15 13 15 13 23 15,18
49 10 13 11 31 11 14 13 14 13 23 14,17
42 11 13 12 29 12 15 14 13 13 24 11,14
39 11 12 12 29 11 14 13 16 13 24 14,14
37 10 13 11 30 11 14 13 14 13 24 14,15
36 10 13 11 28 10 14 16 11 13 23 13,13
31 10 13 11 30 11 14 14 16 13 25 12,18
Count DYS456 DYS389I DYS390 DYS389II DYS458 DYS19 DYS385 DYS393 DYS391 DYS439 DYS635 DYS392 YGATAH4 DYS437 DYS438 DYS448
28 15 14 23 32 15 13 15,18 13 10 10 22 15 13 15 12 20
23 15 12 25 28 15 14 16,17 14 10 12 22 14 12 14 11 20
21 15 13 23 29 18 15 15,15 12 9 11 22 11 11 14 10 21
19 17 13 24 30 15 13 14,15 13 10 11 23 14 11 14 11 19
18 15 12 23 30 17 13 16,17 13 10 13 23 15 12 14 11 20
16 15 13 23 29 18 14 15,15 12 9 11 22 11 11 14 10 21
15 15 13 23 28 19 15 15,16 12 9 11 23 11 12 14 10 21
14 15 13 25 30 15 14 12,18 13 10 11 22 16 12 14 11 19
12 15 12 23 29 17 13 15,17 13 10 13 23 15 12 14 11 20
12 16 13 23 31 16 13 14,17 13 10 11 23 14 12 14 11 0
Count DYS576 DYS389I DYS448 DYS389II DYS19 DYS391 DYS481 DYS549 DYS533 DYS438 DYS437 DYS570 DYS635 DYS390 DYS439 DYS392 DYS643 DYS393 DYS458 DYS385 DYS456 YGATAH4
20 16 14 20 32 13 10 26 14 11 12 15 19 22 23 10 15 10 13 15 15,18 15 13
14 17 13 19 30 13 10 23 12 12 11 14 20 23 24 11 14 10 13 15 14,15 17 11
12 16 13 19 30 14 10 25 12 11 11 14 19 22 25 11 16 10 13 15 12,18 15 12
10 18 13 21 29 14 9 25 12 13 10 14 17 22 23 11 11 9 12 18 15,15 15 11
9 18 12 20 28 14 10 25 13 10 11 14 17 22 25 11 15 10 14 15 16,17 15 12
9 18 12 20 28 14 10 25 13 11 11 14 17 22 25 12 14 10 14 15 16,17 15 12
8 17 13 21 29 15 9 25 12 13 10 14 16 22 23 11 11 9 12 18 15,15 14 11
8 17 13 21 29 15 9 26 12 13 10 14 16 22 23 11 11 9 12 18 15,15 15 11
7 17 14 21 30 13 10 25 13 12 11 14 17 22 23 14 14 10 13 15 16,17 15 12
7 18 12 20 29 13 10 24 13 12 11 14 16 23 23 13 15 10 13 17 15,17 15 12
Count DYS576 DYS389I DYS635 DYS389II DYS627 DYS460 DYS458 DYS19 YGATAH4 DYS448 DYS391 DYS456 DYS390 DYS438 DYS392 DYS518 DYS570 DYS437 DYS385 DYS449 DYS393 DYS439 DYS481 DYF387S1 DYS533
14 16 14 22 32 22 10 15 13 13 20 10 15 23 12 15 36 19 15 15,18 31 13 10 26 35,40 11
8 17 13 22 29 21 11 18 15 11 21 9 15 23 10 11 40 16 14 15,15 28 12 11 26 37,38 13
8 18 13 23 31 21 10 16 13 12 0 10 16 23 11 14 39 18 14 14,17 27 13 11 23 35,40 11
7 17 13 22 29 21 11 18 15 11 21 9 14 23 10 11 40 16 14 15,15 28 12 11 25 37,38 13
6 16 12 22 28 18.2 11 16 14 11 20 10 14 22 10 11 41 19 15 13,14 30 13 11 25 38,38 11
6 16 13 22 29 18 11 15 14 12 19 10 15 25 11 14 39 20 14 12,18 27 13 11 25 36,38 11
6 16 13 22 30 18 11 15 14 12 19 10 15 25 11 16 39 19 14 12,18 27 13 11 25 36,38 11
6 17 13 23 30 20 11 15 13 11 19 10 17 24 11 14 40 20 14 14,15 29 13 11 23 34,40 12
6 18 13 22 29 21 11 18 14 11 21 9 15 23 10 11 39 17 14 15,15 29 12 11 25 37,38 13
5 17 13 23 28 20 11 15 13 11 19 10 17 24 11 14 38 19 14 15,16 29 13 11 24 35,40 12
Count DYS19 DYS389I DYS389II DYS390 DYS391 DYS392 DYS393 DYS385 DYS439 DYS438 DYS437 DYS456 DYS458 DYS635 YGATAH4 DYS448 DYS576 DYS481 DYS549 DYS533 DYS570 DYS643 DYS627 DYS460 DYS518 DYS449 DYF387S1
13 13 14 32 23 10 15 13 15,18 10 12 15 15 15 22 13 20 16 26 14 11 19 10 22 10 36 31 35,40
8 15 13 29 23 9 11 12 15,15 11 10 14 15 18 22 11 21 17 26 12 13 16 9 21 11 40 28 37,38
6 13 13 30 24 10 14 13 14,15 11 11 14 17 15 23 11 19 17 23 12 12 20 10 20 11 40 29 34,40
6 13 13 31 23 10 14 13 14,17 11 11 14 16 16 23 12 0 18 23 14 11 18 10 21 10 39 27 35,40
6 14 13 30 25 10 16 13 12,18 11 11 14 15 15 22 12 19 16 25 12 11 19 10 18 11 39 27 36,38
6 15 13 29 23 9 11 12 15,15 11 10 14 14 18 22 11 21 17 25 12 13 16 9 21 11 40 28 37,38
5 13 12 28 24 10 16 13 14,17 12 11 14 15 16 23 13 20 19 25 12 11 19 10 18 11 37 30 37,42
5 13 13 28 24 10 14 13 15,16 11 11 14 17 15 23 11 19 17 24 11 12 19 10 20 11 38 29 35,40
5 13 14 33 24 10 13 13 16,17 13 11 14 15 17 23 13 20 18 25 11 11 15 10 21 10 37 29 36,37
5 14 13 29 23 9 11 12 15,15 11 10 14 15 18 22 11 21 18 25 12 13 17 9 21 11 39 29 37,38

Discrete-Laplace frequency estimation (Minimal)

Release
R67
Loci included
DYS19, DYS389I, DYS389II*, DYS390, DYS391, DYS392, DYS393
Central haplotypes
33
EM converged
true
EM iterations
33
GLM method
internal_coef
Init method
pam
Threshold frequency
1 in 142,719
Per locus details
DL centers distribution (download PDF)
Table of haplotype centers (click to show/hide)
DYS19 DYS389I DYS389II* DYS390 DYS391 DYS392 DYS393
1 13 13 17 24 10 11 13
2 14 12 16 22 10 11 13
3 15 13 17 23 10 12 14
4 14 12 16 23 10 11 13
5 16 13 17 24 10 11 13
6 14 13 17 23 10 14 13
7 14 13 16 24 11 13 13
8 14 13 16 24 10 13 13
9 14 13 16 25 11 13 13
10 14 13 16 23 11 13 13
11 14 13 17 24 11 13 13
12 15 13 17 21 10 11 14
13 14 13 17 25 10 14 13
14 13 13 17 24 10 14 13
15 14 13 17 24 10 14 12
16 14 12 16 25 10 14 14
17 15 13 16 23 9 11 12
18 13 14 18 23 10 15 13
19 13 14 16 23 10 14 13
20 13 14 17 21 10 14 15
21 13 12 17 23 10 15 13
22 13 13 17 24 10 14 14
23 14 13 16 24 10 15 13
24 14 13 17 23 10 11 12
25 13 14 16 24 10 15 14
26 13 13 18 23 10 14 13
27 15 13 17 25 11 11 13
28 14 14 19 23 10 14 13
29 13 13 17 24 11 16 13
30 16 13 15 23 10 11 13
31 13 12 16 24 10 16 13
32 13 13 16 23 11 16 13
33 14 13 17 25 10 16 13

Discrete-Laplace frequency estimation (Y17)

Release
R67
Loci included
DYS19, DYS389I, DYS389II*, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATAH4
Central haplotypes
41
EM converged
true
EM iterations
26
GLM method
internal_coef
Init method
pam
Threshold frequency
1 in 107,771,558
Per locus details
DL centers distribution (download PDF)
Table of haplotype centers (click to show/hide)
DYS19 DYS389I DYS389II* DYS390 DYS391 DYS392 DYS393 DYS437 DYS438 DYS439 DYS448 DYS456 DYS458 DYS635 YGATAH4
1 13 14 17 24 10 14 14 15 10 13 21 16 17 22 11
2 15 12 17 22 10 11 14 16 10 11 21 15 16 20 12
3 13 14 16 24 10 15 14 15 11 11 18 15 14 22 10
4 14 13 16 23 11 13 13 15 12 11 19 16 17 23 12
5 14 13 16 24 10 13 13 15 12 12 19 15 17 23 12
6 14 13 16 24 11 13 13 14 12 12 18 15 17 23 11
7 13 13 17 24 10 14 13 14 11 12 19 15 16 22 11
8 14 13 16 24 11 13 13 15 12 12 19 16 16 23 12
9 14 13 16 23 10 14 13 14 12 12 19 17 17 22 11
10 15 13 16 23 9 11 12 14 10 11 21 15 18 22 11
11 14 13 16 25 11 14 13 15 12 12 18 17 17 23 12
12 14 12 16 23 10 11 13 16 10 11 20 14 16 21 11
13 15 13 16 23 9 11 12 14 10 11 21 15 19 23 12
14 13 13 17 24 10 16 13 14 11 12 20 16 17 22 12
15 13 13 17 23 10 14 13 14 11 12 21 15 14 22 12
16 16 13 17 25 10 11 13 14 11 10 20 16 15 23 12
17 14 13 16 24 11 13 13 15 12 12 19 16 18 23 12
18 13 13 17 24 10 14 13 14 11 11 19 17 15 23 11
19 14 12 16 22 10 11 13 16 10 11 20 14 15 22 11
20 12 13 18 25 10 14 13 14 11 13 19 17 15 22 11
21 13 13 17 24 10 11 13 14 10 12 20 16 16 22 12
22 15 13 17 23 10 12 14 14 10 11 20 15 15 21 11
23 13 13 17 24 10 14 14 15 11 11 20 16 16 22 11
24 13 14 19 24 10 13 13 14 11 13 20 15 17 23 13
25 14 14 16 23 11 14 14 14 10 10 19 14 17 21 12
26 16 13 17 21 10 11 14 14 11 12 21 15 17 21 11
27 16 13 16 23 10 11 13 14 10 11 20 15 17 22 11
28 14 13 16 23 10 11 12 14 9 11 20 15 15 21 12
29 14 14 18 23 10 14 13 14 12 11 19 15 17 22 12
30 13 12 17 23 10 15 13 14 11 13 20 15 17 23 12
31 13 13 16 23 11 16 13 14 11 12 19 15 16 25 10
32 13 12 17 24 9 14 13 14 11 13 20 17 16 22 11
33 13 13 17 24 10 15 14 14 11 11 19 17 16 22 12
34 13 14 16 23 10 14 13 14 11 13 21 15 15 22 12
35 14 13 17 24 10 14 13 14 11 11 19 15 15 22 12
36 14 12 16 25 10 14 14 14 11 12 20 15 15 22 12
37 13 14 16 24 9 11 13 14 10 10 20 16 18 21 12
38 14 14 16 24 10 15 13 14 11 13 19 14 17 22 12
39 13 12 17 24 10 16 13 14 11 12 20 15 17 23 13
40 13 14 18 23 10 15 13 15 12 10 20 15 15 22 13
41 13 14 17 21 10 14 15 14 11 11 19 15 17 22 11

* Please note that DYS389I was substracted from DYS389II

Population studies

  • Bolnick DA., Bolnick DI. and Smith DG. (2006), 'Asymmetric male and female genetic histories among Native Americans from Eastern North America.', Mol Biol Evol 23(11):2161-74 [PubMed] [DOI]
  • Davis C., Ge J., Chidambaram A., King J., Turnbough M., Collins M., Dym O., Chakraborty R., Eisenberg AJ. and Budowle B. (2011), 'Y-STR loci diversity in native Alaskan populations.', Int J Legal Med 125(4):559-63 [PubMed] [DOI]
  • Xu H., Wang CC., Shrestha R., Wang LX., Zhang M., He Y., Kidd JR., Kidd KK., Jin L. and Li H. (2015), 'Inferring population structure and demographic history using Y‐STR data from worldwide populations', Mol Genet Genomics 290(1):141-50 [DOI]
  • Pignone ML., Manzella AM., Galusha M., Le J. and Moreno LI. (2022), 'Y-STR Sample Haplotypes From Five United States of America Population Groups', Forensic Science International: Reports 100274:In press [DOI]

Personal communications

YA005394, YA005841, YA005359, YA005602, YA005448, YA005283, YA005262, YA005889
* See FAQ/Glossary (http://yhrd.org/pages/faq) for further explanations of abbreviated terms used here