Information on the East Asian - Japanese Metapopulation

The Japanese Metapopulation (East Asian - Japanese) consists of 2303 minimal haplotypes.

Population Sample	Minimal	PowerPlex Y	Yfiler	PowerPlex Y23	Yfiler Plus	Maximal
Aomori, Japan [Japanese]	95 Haplotypes	95 Haplotypes	95 Haplotypes	0 Haplotypes	95 Haplotypes	0 Haplotypes
Chiba, Japan [Japanese]	37 Haplotypes	37 Haplotypes	37 Haplotypes	0 Haplotypes	37 Haplotypes	0 Haplotypes
Ehime, Japan [Japanese]	103 Haplotypes	103 Haplotypes	103 Haplotypes	0 Haplotypes	103 Haplotypes	0 Haplotypes
Fukuoka, Japan [Japanese]	53 Haplotypes	53 Haplotypes	53 Haplotypes	0 Haplotypes	53 Haplotypes	0 Haplotypes
Gunma, Japan [Japanese]	110 Haplotypes	110 Haplotypes	110 Haplotypes	37 Haplotypes	69 Haplotypes	0 Haplotypes
Hiroshima, Japan [Japanese]	14 Haplotypes	14 Haplotypes	14 Haplotypes	0 Haplotypes	14 Haplotypes	0 Haplotypes
Hokkaido, Japan [Japanese]	50 Haplotypes	50 Haplotypes	50 Haplotypes	0 Haplotypes	50 Haplotypes	0 Haplotypes
Hyogo, Japan [Japanese]	75 Haplotypes	75 Haplotypes	75 Haplotypes	0 Haplotypes	75 Haplotypes	0 Haplotypes
Ibaraki/Tokushima/Yamaguchi, Japan [Japanese]	157 Haplotypes	157 Haplotypes	157 Haplotypes	0 Haplotypes	0 Haplotypes	0 Haplotypes
Mie, Japan [Japanese]	46 Haplotypes	46 Haplotypes	46 Haplotypes	0 Haplotypes	46 Haplotypes	0 Haplotypes
Miyagi, Japan [Japanese]	40 Haplotypes	40 Haplotypes	40 Haplotypes	0 Haplotypes	40 Haplotypes	0 Haplotypes
Nagasaki, Japan [Japanese]	60 Haplotypes	60 Haplotypes	60 Haplotypes	0 Haplotypes	58 Haplotypes	0 Haplotypes
Nagoya, Japan [Japanese]	207 Haplotypes	0 Haplotypes	0 Haplotypes	0 Haplotypes	0 Haplotypes	0 Haplotypes
Nara, Japan [Japanese]	44 Haplotypes	44 Haplotypes	44 Haplotypes	0 Haplotypes	44 Haplotypes	0 Haplotypes
Okayama, Japan [Japanese]	77 Haplotypes	77 Haplotypes	77 Haplotypes	0 Haplotypes	76 Haplotypes	0 Haplotypes
Okinawa, Japan [Japanese]	235 Haplotypes	148 Haplotypes	148 Haplotypes	0 Haplotypes	148 Haplotypes	0 Haplotypes
Osaka, Japan [Japanese]	100 Haplotypes	0 Haplotypes	0 Haplotypes	0 Haplotypes	0 Haplotypes	0 Haplotypes
Shizuoka, Japan [Japanese]	208 Haplotypes	208 Haplotypes	208 Haplotypes	64 Haplotypes	143 Haplotypes	0 Haplotypes
Tokyo, Japan [Japanese]	156 Haplotypes	156 Haplotypes	156 Haplotypes	59 Haplotypes	0 Haplotypes	0 Haplotypes
Toyama, Japan [Japanese]	52 Haplotypes	52 Haplotypes	52 Haplotypes	0 Haplotypes	52 Haplotypes	0 Haplotypes
Wakayama, Japan [Japanese]	78 Haplotypes	78 Haplotypes	78 Haplotypes	0 Haplotypes	78 Haplotypes	0 Haplotypes
Yamaguchi, Japan [Japanese]	53 Haplotypes	53 Haplotypes	53 Haplotypes	0 Haplotypes	45 Haplotypes	0 Haplotypes
Yamanashi, Japan [Japanese]	42 Haplotypes	42 Haplotypes	42 Haplotypes	0 Haplotypes	42 Haplotypes	0 Haplotypes
Tsukuba, Japan [Japanese]	163 Haplotypes	163 Haplotypes	163 Haplotypes	163 Haplotypes	0 Haplotypes	0 Haplotypes
United States [Japanese]	17 Haplotypes	17 Haplotypes	17 Haplotypes	0 Haplotypes	17 Haplotypes	0 Haplotypes
Aichi, Japan [Japanese]	31 Haplotypes	31 Haplotypes	31 Haplotypes	0 Haplotypes	31 Haplotypes	0 Haplotypes
(Overall)	2303 Haplotypes	1909 Haplotypes	1909 Haplotypes	323 Haplotypes	1316 Haplotypes	0 Haplotypes

Discrete-Laplace frequency estimation (Minimal)

Release: R59
Loci included: DYS19, DYS389I, DYS389II^*, DYS390, DYS391, DYS392, DYS393
Central haplotypes: 22
EM converged: true
EM iterations: 18
GLM method: internal_coef
Init method: pam
Per locus details: DL centers distribution (download PDF)

Table of haplotype centers (click to show/hide)

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	16	13	16	23	10	11	14
2	15	14	16	22	10	13	13
3	14	12	16	24	10	14	12
4	16	12	17	24	10	13	12
5	16	14	17	25	10	11	13
6	16	14	15	23	10	13	13
7	15	13	16	24	10	13	12
8	15	12	16	23	10	12	12
9	15	14	17	25	10	11	13
10	17	13	17	25	10	11	13
11	15	14	16	23	10	11	15
12	15	14	15	22	10	13	13
13	17	14	17	25	10	11	13
14	15	13	17	25	10	11	13
15	13	13	16	24	10	11	14
16	14	13	16	23	10	14	13
17	15	13	16	22	10	13	13
18	17	12	16	25	10	13	12
19	16	11	16	23	11	12	12
20	15	12	17	24	10	14	14
21	15	13	15	22	10	13	13
22	15	14	18	23	10	12	12

Discrete-Laplace frequency estimation (Yfiler)

Release: R59
Loci included: DYS19, DYS389I, DYS389II^*, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATAH4
Central haplotypes: 25
EM converged: true
EM iterations: 88
GLM method: internal_coef
Init method: pam
Per locus details: DL centers distribution (download PDF)

Table of haplotype centers (click to show/hide)

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	16	23	10	11	15	14	10	12	21	15	16	21	11
2	15	14	16	22	10	13	13	14	13	12	18	15	17	20	12
3	14	11	16	23	10	14	12	15	11	12	20	15	18	21	11
4	16	12	17	24	10	13	12	14	10	12	19	15	18	23	12
5	15	14	16	22	10	13	13	14	13	12	18	15	19	20	12
6	16	14	17	25	10	11	13	14	10	12	19	15	15	21	11
7	16	14	15	23	10	13	13	14	13	12	18	15	17	21	11
8	15	13	17	24	10	11	13	14	11	12	16	15	16	21	11
9	15	14	16	22	10	13	13	14	13	12	18	15	18	20	12
10	15	14	15	22	10	13	13	14	13	12	18	15	19	20	12
11	15	12	16	23	10	12	12	15	10	12	19	15	18	20	12
12	17	14	17	25	10	11	13	14	10	12	19	15	15	21	11
13	15	13	17	25	10	11	13	14	10	12	17	16	15	21	12
14	15	13	17	24	10	13	11	15	10	12	20	15	16	20	11
15	13	13	16	24	10	11	14	14	10	13	18	16	19	21	12
16	16	11	16	23	11	12	12	15	10	13	19	16	18	20	11
17	14	12	16	24	10	14	12	15	11	12	20	15	18	20	12
18	14	13	16	23	10	14	13	14	10	11	19	15	16	22	12
19	15	12	16	23	10	14	13	14	10	12	18	16	16	21	11
20	16	12	16	25	10	13	12	14	10	12	19	14	18	22	12
21	15	13	17	25	10	13	14	14	10	12	18	14	18	22	10
22	17	13	17	25	10	11	13	14	10	12	18	15	16	22	12
23	16	12	17	24	10	13	12	15	10	11	20	15	16	21	12
24	15	14	18	23	10	12	12	14	11	12	18	15	17	21	11
25	16	13	16	23	10	11	14	14	9	12	18	15	16	21	12

^* Please note that DYS389I was substracted from DYS389II

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	16	13	16	23	10	11	14
2	15	14	16	22	10	13	13
3	14	12	16	24	10	14	12
4	16	12	17	24	10	13	12
5	16	14	17	25	10	11	13
6	16	14	15	23	10	13	13
7	15	13	16	24	10	13	12
8	15	12	16	23	10	12	12
9	15	14	17	25	10	11	13
10	17	13	17	25	10	11	13
11	15	14	16	23	10	11	15
12	15	14	15	22	10	13	13
13	17	14	17	25	10	11	13
14	15	13	17	25	10	11	13
15	13	13	16	24	10	11	14
16	14	13	16	23	10	14	13
17	15	13	16	22	10	13	13
18	17	12	16	25	10	13	12
19	16	11	16	23	11	12	12
20	15	12	17	24	10	14	14
21	15	13	15	22	10	13	13
22	15	14	18	23	10	12	12

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	16	23	10	11	15	14	10	12	21	15	16	21	11
2	15	14	16	22	10	13	13	14	13	12	18	15	17	20	12
3	14	11	16	23	10	14	12	15	11	12	20	15	18	21	11
4	16	12	17	24	10	13	12	14	10	12	19	15	18	23	12
5	15	14	16	22	10	13	13	14	13	12	18	15	19	20	12
6	16	14	17	25	10	11	13	14	10	12	19	15	15	21	11
7	16	14	15	23	10	13	13	14	13	12	18	15	17	21	11
8	15	13	17	24	10	11	13	14	11	12	16	15	16	21	11
9	15	14	16	22	10	13	13	14	13	12	18	15	18	20	12
10	15	14	15	22	10	13	13	14	13	12	18	15	19	20	12
11	15	12	16	23	10	12	12	15	10	12	19	15	18	20	12
12	17	14	17	25	10	11	13	14	10	12	19	15	15	21	11
13	15	13	17	25	10	11	13	14	10	12	17	16	15	21	12
14	15	13	17	24	10	13	11	15	10	12	20	15	16	20	11
15	13	13	16	24	10	11	14	14	10	13	18	16	19	21	12
16	16	11	16	23	11	12	12	15	10	13	19	16	18	20	11
17	14	12	16	24	10	14	12	15	11	12	20	15	18	20	12
18	14	13	16	23	10	14	13	14	10	11	19	15	16	22	12
19	15	12	16	23	10	14	13	14	10	12	18	16	16	21	11
20	16	12	16	25	10	13	12	14	10	12	19	14	18	22	12
21	15	13	17	25	10	13	14	14	10	12	18	14	18	22	10
22	17	13	17	25	10	11	13	14	10	12	18	15	16	22	12
23	16	12	17	24	10	13	12	15	10	11	20	15	16	21	12
24	15	14	18	23	10	12	12	14	11	12	18	15	17	21	11
25	16	13	16	23	10	11	14	14	9	12	18	15	16	21	12

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	16	13	16	23	10	11	14
2	15	14	16	22	10	13	13
3	14	12	16	24	10	14	12
4	16	12	17	24	10	13	12
5	16	14	17	25	10	11	13
6	16	14	15	23	10	13	13
7	15	13	16	24	10	13	12
8	15	12	16	23	10	12	12
9	15	14	17	25	10	11	13
10	17	13	17	25	10	11	13
11	15	14	16	23	10	11	15
12	15	14	15	22	10	13	13
13	17	14	17	25	10	11	13
14	15	13	17	25	10	11	13
15	13	13	16	24	10	11	14
16	14	13	16	23	10	14	13
17	15	13	16	22	10	13	13
18	17	12	16	25	10	13	12
19	16	11	16	23	11	12	12
20	15	12	17	24	10	14	14
21	15	13	15	22	10	13	13
22	15	14	18	23	10	12	12

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	16	23	10	11	15	14	10	12	21	15	16	21	11
2	15	14	16	22	10	13	13	14	13	12	18	15	17	20	12
3	14	11	16	23	10	14	12	15	11	12	20	15	18	21	11
4	16	12	17	24	10	13	12	14	10	12	19	15	18	23	12
5	15	14	16	22	10	13	13	14	13	12	18	15	19	20	12
6	16	14	17	25	10	11	13	14	10	12	19	15	15	21	11
7	16	14	15	23	10	13	13	14	13	12	18	15	17	21	11
8	15	13	17	24	10	11	13	14	11	12	16	15	16	21	11
9	15	14	16	22	10	13	13	14	13	12	18	15	18	20	12
10	15	14	15	22	10	13	13	14	13	12	18	15	19	20	12
11	15	12	16	23	10	12	12	15	10	12	19	15	18	20	12
12	17	14	17	25	10	11	13	14	10	12	19	15	15	21	11
13	15	13	17	25	10	11	13	14	10	12	17	16	15	21	12
14	15	13	17	24	10	13	11	15	10	12	20	15	16	20	11
15	13	13	16	24	10	11	14	14	10	13	18	16	19	21	12
16	16	11	16	23	11	12	12	15	10	13	19	16	18	20	11
17	14	12	16	24	10	14	12	15	11	12	20	15	18	20	12
18	14	13	16	23	10	14	13	14	10	11	19	15	16	22	12
19	15	12	16	23	10	14	13	14	10	12	18	16	16	21	11
20	16	12	16	25	10	13	12	14	10	12	19	14	18	22	12
21	15	13	17	25	10	13	14	14	10	12	18	14	18	22	10
22	17	13	17	25	10	11	13	14	10	12	18	15	16	22	12
23	16	12	17	24	10	13	12	15	10	11	20	15	16	21	12
24	15	14	18	23	10	12	12	14	11	12	18	15	17	21	11
25	16	13	16	23	10	11	14	14	9	12	18	15	16	21	12

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393
1	16	13	16	23	10	11	14
2	15	14	16	22	10	13	13
3	14	12	16	24	10	14	12
4	16	12	17	24	10	13	12
5	16	14	17	25	10	11	13
6	16	14	15	23	10	13	13
7	15	13	16	24	10	13	12
8	15	12	16	23	10	12	12
9	15	14	17	25	10	11	13
10	17	13	17	25	10	11	13
11	15	14	16	23	10	11	15
12	15	14	15	22	10	13	13
13	17	14	17	25	10	11	13
14	15	13	17	25	10	11	13
15	13	13	16	24	10	11	14
16	14	13	16	23	10	14	13
17	15	13	16	22	10	13	13
18	17	12	16	25	10	13	12
19	16	11	16	23	11	12	12
20	15	12	17	24	10	14	14
21	15	13	15	22	10	13	13
22	15	14	18	23	10	12	12

	DYS19	DYS389I	DYS389II^*	DYS390	DYS391	DYS392	DYS393	DYS437	DYS438	DYS439	DYS448	DYS456	DYS458	DYS635	YGATAH4
1	15	14	16	23	10	11	15	14	10	12	21	15	16	21	11
2	15	14	16	22	10	13	13	14	13	12	18	15	17	20	12
3	14	11	16	23	10	14	12	15	11	12	20	15	18	21	11
4	16	12	17	24	10	13	12	14	10	12	19	15	18	23	12
5	15	14	16	22	10	13	13	14	13	12	18	15	19	20	12
6	16	14	17	25	10	11	13	14	10	12	19	15	15	21	11
7	16	14	15	23	10	13	13	14	13	12	18	15	17	21	11
8	15	13	17	24	10	11	13	14	11	12	16	15	16	21	11
9	15	14	16	22	10	13	13	14	13	12	18	15	18	20	12
10	15	14	15	22	10	13	13	14	13	12	18	15	19	20	12
11	15	12	16	23	10	12	12	15	10	12	19	15	18	20	12
12	17	14	17	25	10	11	13	14	10	12	19	15	15	21	11
13	15	13	17	25	10	11	13	14	10	12	17	16	15	21	12
14	15	13	17	24	10	13	11	15	10	12	20	15	16	20	11
15	13	13	16	24	10	11	14	14	10	13	18	16	19	21	12
16	16	11	16	23	11	12	12	15	10	13	19	16	18	20	11
17	14	12	16	24	10	14	12	15	11	12	20	15	18	20	12
18	14	13	16	23	10	14	13	14	10	11	19	15	16	22	12
19	15	12	16	23	10	14	13	14	10	12	18	16	16	21	11
20	16	12	16	25	10	13	12	14	10	12	19	14	18	22	12
21	15	13	17	25	10	13	14	14	10	12	18	14	18	22	10
22	17	13	17	25	10	11	13	14	10	12	18	15	16	22	12
23	16	12	17	24	10	13	12	15	10	11	20	15	16	21	12
24	15	14	18	23	10	12	12	14	11	12	18	15	17	21	11
25	16	13	16	23	10	11	14	14	9	12	18	15	16	21	12