Information on the East Asian - Japanese Metapopulation

The Japanese Metapopulation (East Asian - Japanese) consists of 2303 haplotypes (at least minimal) and 26 unique population samples.

Most common haplotypes

Count DYS19 DYS389I DYS389II DYS390 DYS391 DYS392 DYS393 DYS385
76 17 14 31 25 10 11 13 13,17
74 15 14 30 22 10 13 13 10,20
52 15 14 30 22 10 13 13 10,19
34 15 13 30 25 10 11 13 14,17
32 15 14 29 22 10 13 13 10,20
32 15 14 30 22 10 13 13 10,18
28 15 14 29 22 10 13 13 10,19
25 16 14 31 25 10 11 13 13,17
22 13 13 29 24 10 11 14 13,15
21 16 14 29 23 10 13 13 10,18
Count DYS391 DYS389I DYS439 DYS389II DYS438 DYS437 DYS19 DYS392 DYS393 DYS390 DYS385
48 10 14 12 31 10 14 17 11 13 25 13,17
36 10 14 12 30 13 14 15 13 13 22 10,20
27 10 14 12 30 13 14 15 13 13 22 10,19
25 10 13 12 30 10 14 15 11 13 25 14,17
21 10 14 12 30 13 14 15 13 13 22 10,18
15 10 14 12 29 13 14 15 13 13 22 10,19
15 10 14 12 31 10 14 16 11 13 25 13,17
14 10 14 13 30 13 14 15 13 13 22 10,19
13 10 14 12 29 13 14 16 13 13 23 10,18
12 10 14 12 29 13 14 15 13 13 22 10,20
Count DYS456 DYS389I DYS390 DYS389II DYS458 DYS19 DYS385 DYS393 DYS391 DYS439 DYS635 DYS392 YGATAH4 DYS437 DYS438 DYS448
32 15 14 25 31 15 17 13,17 13 10 12 21 11 11 14 10 19
13 15 14 22 30 17 15 10,20 13 10 12 20 13 12 14 13 18
12 16 13 25 30 15 15 14,17 13 10 12 21 11 12 14 10 17
11 15 14 25 31 15 16 13,17 13 10 12 21 11 11 14 10 19
8 15 14 22 30 17 15 10,19 13 10 12 20 13 12 14 13 18
8 15 14 25 31 15 17 14,17 13 10 12 21 11 11 14 10 19
7 15 14 22 30 18 15 10,19 13 10 12 20 13 12 14 13 18
7 15 14 22 30 19 15 10,18 13 10 12 20 13 12 14 13 18
7 15 14 25 31 15 16 14,17 13 10 12 21 11 11 14 10 19
6 15 14 22 30 18 15 10,19 13 10 13 20 13 12 14 13 18
Count DYS576 DYS389I DYS448 DYS389II DYS19 DYS391 DYS481 DYS549 DYS533 DYS438 DYS437 DYS570 DYS635 DYS390 DYS439 DYS392 DYS643 DYS393 DYS458 DYS385 DYS456 YGATAH4
2 18 14 17 31 16 10 25 13 12 10 14 17 21 27 14 11 13 13 16 12,16 16 12
2 19 14 19 31 16 10 26 12 12 10 14 18 21 25 12 11 12 13 15 13,17 15 11
Count DYS576 DYS389I DYS635 DYS389II DYS627 DYS460 DYS458 DYS19 YGATAH4 DYS448 DYS391 DYS456 DYS390 DYS438 DYS392 DYS518 DYS570 DYS437 DYS385 DYS449 DYS393 DYS439 DYS481 DYF387S1 DYS533
3 19 14 21 31 22 11 15 17 11 19 10 15 25 10 11 37 17 14 13,17 31 13 12 26 37,37 12
2 18 14 21 31 21 11 15 17 11 19 10 15 25 10 11 37 17 14 13,17 31 13 12 26 37,37 12
2 19 14 22 30 21 11 16 16 12 17 10 17 25 10 11 38 18 14 13,16 33 13 12 29 34,35 12
2 20 12 22 29 20 10 18 16 12 18 10 14 25 10 13 37 18 14 18,19 32 12 11 23 36,39 11

 There are no Maximal haplotypes or all haplotypes are singletons.

Population samples

Population Sample Minimal PowerPlex Y Yfiler PowerPlex Y23 Yfiler Plus Maximal
Aomori, Japan [Japanese] 95 Haplotypes 95 Haplotypes 95 Haplotypes 0 Haplotypes 95 Haplotypes 0 Haplotypes
Chiba, Japan [Japanese] 37 Haplotypes 37 Haplotypes 37 Haplotypes 0 Haplotypes 37 Haplotypes 0 Haplotypes
Ehime, Japan [Japanese] 103 Haplotypes 103 Haplotypes 103 Haplotypes 0 Haplotypes 103 Haplotypes 0 Haplotypes
Fukuoka, Japan [Japanese] 53 Haplotypes 53 Haplotypes 53 Haplotypes 0 Haplotypes 53 Haplotypes 0 Haplotypes
Gunma, Japan [Japanese] 110 Haplotypes 110 Haplotypes 110 Haplotypes 37 Haplotypes 69 Haplotypes 0 Haplotypes
Hiroshima, Japan [Japanese] 14 Haplotypes 14 Haplotypes 14 Haplotypes 0 Haplotypes 14 Haplotypes 0 Haplotypes
Hokkaido, Japan [Japanese] 50 Haplotypes 50 Haplotypes 50 Haplotypes 0 Haplotypes 50 Haplotypes 0 Haplotypes
Hyogo, Japan [Japanese] 75 Haplotypes 75 Haplotypes 75 Haplotypes 0 Haplotypes 75 Haplotypes 0 Haplotypes
Ibaraki/Tokushima/Yamaguchi, Japan [Japanese] 157 Haplotypes 157 Haplotypes 157 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes
Mie, Japan [Japanese] 46 Haplotypes 46 Haplotypes 46 Haplotypes 0 Haplotypes 46 Haplotypes 0 Haplotypes
Miyagi, Japan [Japanese] 40 Haplotypes 40 Haplotypes 40 Haplotypes 0 Haplotypes 40 Haplotypes 0 Haplotypes
Nagasaki, Japan [Japanese] 60 Haplotypes 60 Haplotypes 60 Haplotypes 0 Haplotypes 58 Haplotypes 0 Haplotypes
Nagoya, Japan [Japanese] 207 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes
Nara, Japan [Japanese] 44 Haplotypes 44 Haplotypes 44 Haplotypes 0 Haplotypes 44 Haplotypes 0 Haplotypes
Okayama, Japan [Japanese] 77 Haplotypes 77 Haplotypes 77 Haplotypes 0 Haplotypes 76 Haplotypes 0 Haplotypes
Okinawa, Japan [Japanese] 235 Haplotypes 148 Haplotypes 148 Haplotypes 0 Haplotypes 148 Haplotypes 0 Haplotypes
Osaka, Japan [Japanese] 100 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes
Shizuoka, Japan [Japanese] 208 Haplotypes 208 Haplotypes 208 Haplotypes 64 Haplotypes 143 Haplotypes 0 Haplotypes
Tokyo, Japan [Japanese] 156 Haplotypes 156 Haplotypes 156 Haplotypes 59 Haplotypes 0 Haplotypes 0 Haplotypes
Toyama, Japan [Japanese] 52 Haplotypes 52 Haplotypes 52 Haplotypes 0 Haplotypes 52 Haplotypes 0 Haplotypes
Wakayama, Japan [Japanese] 78 Haplotypes 78 Haplotypes 78 Haplotypes 0 Haplotypes 78 Haplotypes 0 Haplotypes
Yamaguchi, Japan [Japanese] 53 Haplotypes 53 Haplotypes 53 Haplotypes 0 Haplotypes 45 Haplotypes 0 Haplotypes
Yamanashi, Japan [Japanese] 42 Haplotypes 42 Haplotypes 42 Haplotypes 0 Haplotypes 42 Haplotypes 0 Haplotypes
Tsukuba, Japan [Japanese] 163 Haplotypes 163 Haplotypes 163 Haplotypes 163 Haplotypes 0 Haplotypes 0 Haplotypes
United States [Japanese] 17 Haplotypes 17 Haplotypes 17 Haplotypes 0 Haplotypes 17 Haplotypes 0 Haplotypes
Aichi, Japan [Japanese] 31 Haplotypes 31 Haplotypes 31 Haplotypes 0 Haplotypes 31 Haplotypes 0 Haplotypes
(Overall) 2303 Haplotypes 1909 Haplotypes 1909 Haplotypes 323 Haplotypes 1316 Haplotypes 0 Haplotypes

Discrete-Laplace frequency estimation (Minimal)

Release
R63
Loci included
DYS19, DYS389I, DYS389II*, DYS390, DYS391, DYS392, DYS393
Central haplotypes
22
EM converged
true
EM iterations
18
GLM method
internal_coef
Init method
pam
Per locus details
DL centers distribution (download PDF)
Table of haplotype centers (click to show/hide)
DYS19 DYS389I DYS389II* DYS390 DYS391 DYS392 DYS393
1 16 13 16 23 10 11 14
2 15 14 16 22 10 13 13
3 14 12 16 24 10 14 12
4 16 12 17 24 10 13 12
5 16 14 17 25 10 11 13
6 16 14 15 23 10 13 13
7 15 13 16 24 10 13 12
8 15 12 16 23 10 12 12
9 15 14 17 25 10 11 13
10 17 13 17 25 10 11 13
11 15 14 16 23 10 11 15
12 15 14 15 22 10 13 13
13 17 14 17 25 10 11 13
14 15 13 17 25 10 11 13
15 13 13 16 24 10 11 14
16 14 13 16 23 10 14 13
17 15 13 16 22 10 13 13
18 17 12 16 25 10 13 12
19 16 11 16 23 11 12 12
20 15 12 17 24 10 14 14
21 15 13 15 22 10 13 13
22 15 14 18 23 10 12 12

Discrete-Laplace frequency estimation (Yfiler)

Release
R63
Loci included
DYS19, DYS389I, DYS389II*, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATAH4
Central haplotypes
25
EM converged
true
EM iterations
88
GLM method
internal_coef
Init method
pam
Per locus details
DL centers distribution (download PDF)
Table of haplotype centers (click to show/hide)
DYS19 DYS389I DYS389II* DYS390 DYS391 DYS392 DYS393 DYS437 DYS438 DYS439 DYS448 DYS456 DYS458 DYS635 YGATAH4
1 15 14 16 23 10 11 15 14 10 12 21 15 16 21 11
2 15 14 16 22 10 13 13 14 13 12 18 15 17 20 12
3 14 11 16 23 10 14 12 15 11 12 20 15 18 21 11
4 16 12 17 24 10 13 12 14 10 12 19 15 18 23 12
5 15 14 16 22 10 13 13 14 13 12 18 15 19 20 12
6 16 14 17 25 10 11 13 14 10 12 19 15 15 21 11
7 16 14 15 23 10 13 13 14 13 12 18 15 17 21 11
8 15 13 17 24 10 11 13 14 11 12 16 15 16 21 11
9 15 14 16 22 10 13 13 14 13 12 18 15 18 20 12
10 15 14 15 22 10 13 13 14 13 12 18 15 19 20 12
11 15 12 16 23 10 12 12 15 10 12 19 15 18 20 12
12 17 14 17 25 10 11 13 14 10 12 19 15 15 21 11
13 15 13 17 25 10 11 13 14 10 12 17 16 15 21 12
14 15 13 17 24 10 13 11 15 10 12 20 15 16 20 11
15 13 13 16 24 10 11 14 14 10 13 18 16 19 21 12
16 16 11 16 23 11 12 12 15 10 13 19 16 18 20 11
17 14 12 16 24 10 14 12 15 11 12 20 15 18 20 12
18 14 13 16 23 10 14 13 14 10 11 19 15 16 22 12
19 15 12 16 23 10 14 13 14 10 12 18 16 16 21 11
20 16 12 16 25 10 13 12 14 10 12 19 14 18 22 12
21 15 13 17 25 10 13 14 14 10 12 18 14 18 22 10
22 17 13 17 25 10 11 13 14 10 12 18 15 16 22 12
23 16 12 17 24 10 13 12 15 10 11 20 15 16 21 12
24 15 14 18 23 10 12 12 14 11 12 18 15 17 21 11
25 16 13 16 23 10 11 14 14 9 12 18 15 16 21 12

* Please note that DYS389I was substracted from DYS389II

* See FAQ/Glossary (http://yhrd.org/pages/faq) for further explanations of abbreviated terms used here
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