Information on the East Asian - Japanese Metapopulation

The Japanese Metapopulation (East Asian - Japanese) consists of 2303 minimal haplotypes.

Population Sample Minimal PowerPlex Y Yfiler PowerPlex Y23 Yfiler Plus Maximal
Aomori, Japan [Japanese] 95 Haplotypes 95 Haplotypes 95 Haplotypes 0 Haplotypes 95 Haplotypes 0 Haplotypes
Chiba, Japan [Japanese] 37 Haplotypes 37 Haplotypes 37 Haplotypes 0 Haplotypes 37 Haplotypes 0 Haplotypes
Ehime, Japan [Japanese] 103 Haplotypes 103 Haplotypes 103 Haplotypes 0 Haplotypes 103 Haplotypes 0 Haplotypes
Fukuoka, Japan [Japanese] 53 Haplotypes 53 Haplotypes 53 Haplotypes 0 Haplotypes 53 Haplotypes 0 Haplotypes
Gunma, Japan [Japanese] 110 Haplotypes 110 Haplotypes 110 Haplotypes 37 Haplotypes 69 Haplotypes 0 Haplotypes
Hiroshima, Japan [Japanese] 14 Haplotypes 14 Haplotypes 14 Haplotypes 0 Haplotypes 14 Haplotypes 0 Haplotypes
Hokkaido, Japan [Japanese] 50 Haplotypes 50 Haplotypes 50 Haplotypes 0 Haplotypes 50 Haplotypes 0 Haplotypes
Hyogo, Japan [Japanese] 75 Haplotypes 75 Haplotypes 75 Haplotypes 0 Haplotypes 75 Haplotypes 0 Haplotypes
Ibaraki/Tokushima/Yamaguchi, Japan [Japanese] 157 Haplotypes 157 Haplotypes 157 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes
Mie, Japan [Japanese] 46 Haplotypes 46 Haplotypes 46 Haplotypes 0 Haplotypes 46 Haplotypes 0 Haplotypes
Miyagi, Japan [Japanese] 40 Haplotypes 40 Haplotypes 40 Haplotypes 0 Haplotypes 40 Haplotypes 0 Haplotypes
Nagasaki, Japan [Japanese] 60 Haplotypes 60 Haplotypes 60 Haplotypes 0 Haplotypes 58 Haplotypes 0 Haplotypes
Nagoya, Japan [Japanese] 207 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes
Nara, Japan [Japanese] 44 Haplotypes 44 Haplotypes 44 Haplotypes 0 Haplotypes 44 Haplotypes 0 Haplotypes
Okayama, Japan [Japanese] 77 Haplotypes 77 Haplotypes 77 Haplotypes 0 Haplotypes 76 Haplotypes 0 Haplotypes
Okinawa, Japan [Japanese] 235 Haplotypes 148 Haplotypes 148 Haplotypes 0 Haplotypes 148 Haplotypes 0 Haplotypes
Osaka, Japan [Japanese] 100 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes 0 Haplotypes
Shizuoka, Japan [Japanese] 208 Haplotypes 208 Haplotypes 208 Haplotypes 64 Haplotypes 143 Haplotypes 0 Haplotypes
Tokyo, Japan [Japanese] 156 Haplotypes 156 Haplotypes 156 Haplotypes 59 Haplotypes 0 Haplotypes 0 Haplotypes
Toyama, Japan [Japanese] 52 Haplotypes 52 Haplotypes 52 Haplotypes 0 Haplotypes 52 Haplotypes 0 Haplotypes
Wakayama, Japan [Japanese] 78 Haplotypes 78 Haplotypes 78 Haplotypes 0 Haplotypes 78 Haplotypes 0 Haplotypes
Yamaguchi, Japan [Japanese] 53 Haplotypes 53 Haplotypes 53 Haplotypes 0 Haplotypes 45 Haplotypes 0 Haplotypes
Yamanashi, Japan [Japanese] 42 Haplotypes 42 Haplotypes 42 Haplotypes 0 Haplotypes 42 Haplotypes 0 Haplotypes
Tsukuba, Japan [Japanese] 163 Haplotypes 163 Haplotypes 163 Haplotypes 163 Haplotypes 0 Haplotypes 0 Haplotypes
United States [Japanese] 17 Haplotypes 17 Haplotypes 17 Haplotypes 0 Haplotypes 17 Haplotypes 0 Haplotypes
Aichi, Japan [Japanese] 31 Haplotypes 31 Haplotypes 31 Haplotypes 0 Haplotypes 31 Haplotypes 0 Haplotypes
(Overall) 2303 Haplotypes 1909 Haplotypes 1909 Haplotypes 323 Haplotypes 1316 Haplotypes 0 Haplotypes

Discrete-Laplace frequency estimation (Minimal)

Release
R59
Loci included
DYS19, DYS389I, DYS389II*, DYS390, DYS391, DYS392, DYS393
Central haplotypes
22
EM converged
true
EM iterations
18
GLM method
internal_coef
Init method
pam
Per locus details
DL centers distribution (download PDF)
Table of haplotype centers (click to show/hide)
DYS19 DYS389I DYS389II* DYS390 DYS391 DYS392 DYS393
1 16 13 16 23 10 11 14
2 15 14 16 22 10 13 13
3 14 12 16 24 10 14 12
4 16 12 17 24 10 13 12
5 16 14 17 25 10 11 13
6 16 14 15 23 10 13 13
7 15 13 16 24 10 13 12
8 15 12 16 23 10 12 12
9 15 14 17 25 10 11 13
10 17 13 17 25 10 11 13
11 15 14 16 23 10 11 15
12 15 14 15 22 10 13 13
13 17 14 17 25 10 11 13
14 15 13 17 25 10 11 13
15 13 13 16 24 10 11 14
16 14 13 16 23 10 14 13
17 15 13 16 22 10 13 13
18 17 12 16 25 10 13 12
19 16 11 16 23 11 12 12
20 15 12 17 24 10 14 14
21 15 13 15 22 10 13 13
22 15 14 18 23 10 12 12

Discrete-Laplace frequency estimation (Yfiler)

Release
R59
Loci included
DYS19, DYS389I, DYS389II*, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATAH4
Central haplotypes
25
EM converged
true
EM iterations
88
GLM method
internal_coef
Init method
pam
Per locus details
DL centers distribution (download PDF)
Table of haplotype centers (click to show/hide)
DYS19 DYS389I DYS389II* DYS390 DYS391 DYS392 DYS393 DYS437 DYS438 DYS439 DYS448 DYS456 DYS458 DYS635 YGATAH4
1 15 14 16 23 10 11 15 14 10 12 21 15 16 21 11
2 15 14 16 22 10 13 13 14 13 12 18 15 17 20 12
3 14 11 16 23 10 14 12 15 11 12 20 15 18 21 11
4 16 12 17 24 10 13 12 14 10 12 19 15 18 23 12
5 15 14 16 22 10 13 13 14 13 12 18 15 19 20 12
6 16 14 17 25 10 11 13 14 10 12 19 15 15 21 11
7 16 14 15 23 10 13 13 14 13 12 18 15 17 21 11
8 15 13 17 24 10 11 13 14 11 12 16 15 16 21 11
9 15 14 16 22 10 13 13 14 13 12 18 15 18 20 12
10 15 14 15 22 10 13 13 14 13 12 18 15 19 20 12
11 15 12 16 23 10 12 12 15 10 12 19 15 18 20 12
12 17 14 17 25 10 11 13 14 10 12 19 15 15 21 11
13 15 13 17 25 10 11 13 14 10 12 17 16 15 21 12
14 15 13 17 24 10 13 11 15 10 12 20 15 16 20 11
15 13 13 16 24 10 11 14 14 10 13 18 16 19 21 12
16 16 11 16 23 11 12 12 15 10 13 19 16 18 20 11
17 14 12 16 24 10 14 12 15 11 12 20 15 18 20 12
18 14 13 16 23 10 14 13 14 10 11 19 15 16 22 12
19 15 12 16 23 10 14 13 14 10 12 18 16 16 21 11
20 16 12 16 25 10 13 12 14 10 12 19 14 18 22 12
21 15 13 17 25 10 13 14 14 10 12 18 14 18 22 10
22 17 13 17 25 10 11 13 14 10 12 18 15 16 22 12
23 16 12 17 24 10 13 12 15 10 11 20 15 16 21 12
24 15 14 18 23 10 12 12 14 11 12 18 15 17 21 11
25 16 13 16 23 10 11 14 14 9 12 18 15 16 21 12

* Please note that DYS389I was substracted from DYS389II

* See FAQ/Glossary (http://yhrd.org/pages/faq) for further explanations of abbreviated terms used here